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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A07G1044 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | YABBY | ||||||||
Protein Properties | Length: 183aa MW: 20392.9 Da PI: 8.4058 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 224.6 | 2.8e-69 | 4 | 157 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl 101 +se+v yv+CnfCntilavsvP +s f++vtvrCGhC++llsvn+ ++ q++++++ ++++ +e++ ++ ++ s+ ++ s+ Gh_A07G1044 4 GLTSERVWYVHCNFCNTILAVSVPCNSAFNIVTVRCGHCANLLSVNMGTSLQTVPSQDA--------QKQQITIDEDHSNKECGSS-SKCNKFSA--- 89 5689****************************************************996........3333333333333222222.22222222... PP YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++++e++r+pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Gh_A07G1044 90 VDSTEQEATRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 157 3567788999999.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.9E-73 | 6 | 157 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.7E-8 | 101 | 150 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.6E-5 | 105 | 151 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MSMGLTSERV WYVHCNFCNT ILAVSVPCNS AFNIVTVRCG HCANLLSVNM GTSLQTVPSQ 60 DAQKQQITID EDHSNKECGS SSKCNKFSAV DSTEQEATRM PPIRPPEKRQ RVPSAYNRFI 120 KEEIQRIKAS NPDISHREAF STAAKNWAHF PHIHFGLKLE GSKQAKLDQG YADQGSQKSN 180 GYC |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.23498 | 0.0 | boll |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012477546.1 | 1e-136 | PREDICTED: putative axial regulator YABBY 2 | ||||
Swissprot | Q9XFB0 | 6e-79 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A0D2PQJ9 | 1e-136 | A0A0D2PQJ9_G | ||||
STRING | VIT_06s0009g00880.t01 | 1e-101 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5581 | 27 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 3e-80 | YABBY family protein |